Python - Revision history

Unknown user: /* Links */

2023-10-06T13:25:09Z

Links

← Older revision		Revision as of 15:25, 6 October 2023
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	=== Links ===		=== Links ===

	* Some usefull packages		Some usefull packages
	** [https://jupyter.org/ Project Jupyter] -an enhanced interactive Python shell.
	** [https://datasette.io/ Datasette] -data analysis tool		* [https://jupyter.org/ Project Jupyter] -an enhanced interactive Python shell.
	** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting		* [https://datasette.io/ Datasette] -data analysis tool
	** [https://fastapi.tiangolo.com/ FastAPI] -REST interfaces in Python		* [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting
	* Python and Bioinformatics		* [https://fastapi.tiangolo.com/ FastAPI] -REST interfaces in Python
	** [http://www.biopython.org Biopython] -Sequence manipulation et al. Like BioPerl		* [http://www.biopython.org Biopython] -Sequence manipulation et al. Like BioPerl
	** [http://code.google.com/p/pygr/ pygr] -Another package in the same direction,		* [https://github.com/bxlab/bx-python bx-python] -and yet another one
	** [https://github.com/bxlab/bx-python bx-python] -and yet another one

Unknown user: /* Links */

2023-10-06T13:23:43Z

Links

← Older revision		Revision as of 15:23, 6 October 2023
Line 40:		Line 40:
	=== Links ===		=== Links ===

	* Some usefull ~~extensions~~		* Some usefull packages
	** [https://jupyter.org/ Project Jupyter] -an enhanced interactive Python shell.		** [https://jupyter.org/ Project Jupyter] -an enhanced interactive Python shell.
			** [https://datasette.io/ Datasette] -data analysis tool
	** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting		** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting
	** [~~http~~://~~www~~.~~reportlab~~.~~org~~/ ~~Reportlab~~] -~~Plotting~~		** [https://fastapi.tiangolo.com/ FastAPI] -REST interfaces in Python
	* Python and Bioinformatics		* Python and Bioinformatics
	** [http://www.biopython.org Biopython] -Sequence manipulation et al. Like BioPerl		** [http://www.biopython.org Biopython] -Sequence manipulation et al. Like BioPerl
	** [https://github.com/pycogent/pycogent/ PyCogent] -A similar toolkit, but aimed at genomic biology
	** [http://code.google.com/p/pygr/ pygr] -Another package in the same direction,		** [http://code.google.com/p/pygr/ pygr] -Another package in the same direction,
	** [https://github.com/bxlab/bx-python bx-python] -and yet another one		** [https://github.com/bxlab/bx-python bx-python] -and yet another one
	** [http://bioinformatics.oxfordjournals.org/content/21/14/3164.full.pdf TAMO] -sequence motif analysis in Python

Unknown user: /* Links */

2023-10-06T13:20:35Z

Links

← Older revision		Revision as of 15:20, 6 October 2023
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	* Some usefull extensions		* Some usefull extensions
	** [https://~~ipython~~.org/ ~~iPython~~] -an enhanced interactive Python shell.		** [https://jupyter.org/ Project Jupyter] -an enhanced interactive Python shell.
	** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting		** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting
	** [http://www.reportlab.org/ Reportlab] -Plotting		** [http://www.reportlab.org/ Reportlab] -Plotting

Unknown user at 16:13, 25 January 2020

2020-01-25T16:13:02Z

← Older revision		Revision as of 18:13, 25 January 2020
Line 36:		Line 36:
	http://xkcd.com/353/		http://xkcd.com/353/

	Visit my [[https://github.com/MarcSaric GitHub]] account for some Python code (most of which has been written by other people though).		Visit my [https://github.com/MarcSaric GitHub] account for some Python code (most of which has been written by other people though).

	=== Links ===		=== Links ===

Unknown user at 16:12, 25 January 2020

2020-01-25T16:12:39Z

← Older revision		Revision as of 18:12, 25 January 2020
Line 36:		Line 36:
	http://xkcd.com/353/		http://xkcd.com/353/

	~~Still no content here.~~..		Visit my [[https://github.com/MarcSaric GitHub]] account for some Python code (most of which has been written by other people though).

	=== Links ===		=== Links ===

Unknown user: /* Links */

2020-01-25T16:08:09Z

Links

← Older revision		Revision as of 18:08, 25 January 2020
Line 46:		Line 46:
	* Python and Bioinformatics		* Python and Bioinformatics
	** [http://www.biopython.org Biopython] -Sequence manipulation et al. Like BioPerl		** [http://www.biopython.org Biopython] -Sequence manipulation et al. Like BioPerl
	** [~~http~~://pycogent~~.org~~/ PyCogent] -A similar toolkit, but aimed at genomic biology		** [https://github.com/pycogent/pycogent/ PyCogent] -A similar toolkit, but aimed at genomic biology
	** [http://code.google.com/p/pygr/ pygr] -Another package in the same direction,		** [http://code.google.com/p/pygr/ pygr] -Another package in the same direction,
	** [https://github.com/bxlab/bx-python bx-python] -and yet another one		** [https://github.com/bxlab/bx-python bx-python] -and yet another one
	** [http://bioinformatics.oxfordjournals.org/content/21/14/3164.full.pdf TAMO] -sequence motif analysis in Python		** [http://bioinformatics.oxfordjournals.org/content/21/14/3164.full.pdf TAMO] -sequence motif analysis in Python

Unknown user at 16:07, 25 January 2020

2020-01-25T16:07:00Z

← Older revision		Revision as of 18:07, 25 January 2020
Line 41:		Line 41:

	* Some usefull extensions		* Some usefull extensions
	** [~~http~~://ipython~~.scipy~~.org/~~moin/FrontPage~~ iPython] -an enhanced interactive Python shell.		** [https://ipython.org/ iPython] -an enhanced interactive Python shell.
	** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting		** [http://matplotlib.sourceforge.net/index.html Matplotlib] -Reporting
	** [http://www.reportlab.org/ Reportlab] -Plotting		** [http://www.reportlab.org/ Reportlab] -Plotting

Marc Saric: /* And now for something completely different... */

2019-10-08T20:22:16Z

And now for something completely different...

← Older revision		Revision as of 22:22, 8 October 2019
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	I got lucky in being paid to program in Python during my industry-career at [[Postdoc#Exelixis\|Exelixis]], [[Postdoc#BASF_Plant_Science_Company_GmbH\|BASF Plant Science]] as well as [[Postdoc#BASF Business Services GmbH\|BASF Business Services]].		I got lucky in being paid to program in Python during my industry-career at [[Postdoc#Exelixis\|Exelixis]], [[Postdoc#BASF_Plant_Science_Company_GmbH\|BASF Plant Science]] as well as [[Postdoc#BASF Business Services GmbH\|BASF Business Services]].

	~~And of course Python is essential, if you like [[Pymol]], a molecular graphics program which uses it as its extension and scripting language.~~

	To be somehow usefull, here is the proof, that Python is good and Java and Perl are evil:		To be somehow usefull, here is the proof, that Python is good and Java and Perl are evil:

Marc Saric: /* And now for something completely different... */

2016-10-10T15:40:54Z

And now for something completely different...

← Older revision		Revision as of 17:40, 10 October 2016
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	And of course Python is essential, if you like [[Pymol]], a molecular graphics program which uses it as its extension and scripting language.		And of course Python is essential, if you like [[Pymol]], a molecular graphics program which uses it as its extension and scripting language.

	To be somehow usefull, here is the proof, that ~~python~~ is good and Java and Perl are evil:		To be somehow usefull, here is the proof, that Python is good and Java and Perl are evil:
	<br />		<br />
	<syntaxhighlight lang="python">		<syntaxhighlight lang="python">

Marc Saric: /* And now for something completely different... */

2016-10-10T15:38:35Z

And now for something completely different...

← Older revision		Revision as of 17:38, 10 October 2016
Line 3:		Line 3:
	Welcome to my personal [http://www.python.org Python] page. You will only find some links to other sites, as I haven't had time or energy to put together some stuff of general interest.		Welcome to my personal [http://www.python.org Python] page. You will only find some links to other sites, as I haven't had time or energy to put together some stuff of general interest.

	Python is a portable, object-oriented and last but not least easy-to-learn scripting language which can be used for everything from throwaway-scripting to [http://~~sketch~~.~~sourceforge~~.~~net~~ complete applications] .		Python is a portable, object-oriented and last but not least easy-to-learn scripting language which can be used for everything from throwaway-scripting to [http://www.skencil.org/ complete applications] .

	Because it is quite easy to read and to understand, and because it is portable and especially because much stuff for processing [http://www.rcsb.org/pdb/static.do?p=file_formats/index.jsp PDB-files] (containing information about molecular models (Proteins, RNA, organic and inorganic molecules) already existed, I had chosen Python as the implementation language for some data-parsing and conversion tools I desperately needed during and shortly after my [[Diploma\|diploma]]-work.		Because it is quite easy to read and to understand, and because it is portable and especially because much stuff for processing [http://www.rcsb.org/pdb/static.do?p=file_formats/index.jsp PDB-files] (containing information about molecular models (Proteins, RNA, organic and inorganic molecules) already existed, I had chosen Python as the implementation language for some data-parsing and conversion tools I desperately needed during and shortly after my [[Diploma\|diploma]]-work.